ls data/sra/ | while read id; do parallel-fastq-dump -s ./data/sra/$id --o ./data/fastq --split-files -t 30; done
nohup ls data/sra | while read id; do hisat2 -p 30 -x index/genome.index -1 data/fastq/$id\_1.fastq -2 data/fastq/$id\_2.fastq | /usr/local/bin/samtools sort -@ 10 -o mapping/$id.sorted.bam;done &
|