GAPIT3笔记

• 安装

服务器编译失败，转用腾讯云安装，然后将对应的R包拷贝到服务器上。

• 示例

library(GAPIT3)

myY <- read.table("~/temp_file/GAPIT3-master/inst/extdata/mdp_traits.txt", head = TRUE)
myGD=read.table(file="~/temp_file/GAPIT3-master/inst/extdata/mdp_numeric.txt",head=T)
myGM=read.table(file="~/temp_file/GAPIT3-master/inst/extdata/mdp_SNP_information.txt",head=T)

myGAPIT_MLM <- GAPIT(
  Y=myY[,c(1,3)], #fist column is individual ID, the third columns is days to pollination
  GD=myGD,
  GM=myGM,
  PCA.total=3,
  model=c("GLM", "MLM", "CMLM", "FarmCPU", "Blink"),
  Multiple_analysis=TRUE)

---

💌lixiang117423@foxmail.com
💌lixiang117423@gmail.com