featurecounts使用

  • 下载
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wget https://jaist.dl.sourceforge.net/project/subread/subread-2.0.2/subread-2.0.2-Linux-x86_64.tar.gz

将bin目录加入到环境变量即可。

  • 使用案列
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/srv/software/subread/bin/featureCounts -p -t exon -g transcript_id -a genome/new/genome.gtf -o counts/Me0dcount.featurecounts.txt bam/Me0d.sorted.bam
/srv/software/subread/bin/featureCounts -p -t exon -g transcript_id -a genome/new/genome.gtf -o counts/Me2d_1count.featurecounts.txt bam/Me2d_1.sorted.bam
/srv/software/subread/bin/featureCounts -p -t exon -g transcript_id -a genome/new/genome.gtf -o counts/Me2d_2count.featurecounts.txt bam/Me2d_2.sorted.bam
/srv/software/subread/bin/featureCounts -p -t exon -g transcript_id -a genome/new/genome.gtf -o counts/Me2d_3count.featurecounts.txt bam/Me2d_3.sorted.bam
/srv/software/subread/bin/featureCounts -p -t exon -g transcript_id -a genome/new/genome.gtf -o counts/Me6d_1count.featurecounts.txt bam/Me6d_1.sorted.bam
/srv/software/subread/bin/featureCounts -p -t exon -g transcript_id -a genome/new/genome.gtf -o counts/Me6d_2count.featurecounts.txt bam/Me6d_2.sorted.bam
/srv/software/subread/bin/featureCounts -p -t exon -g transcript_id -a genome/new/genome.gtf -o counts/Me6d_3count.featurecounts.txt bam/Me6d_3.sorted.bam

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featurecounts使用
https://lixiang117423.github.io/article/featurecounts/
作者
小蓝哥
发布于
2022年1月1日
许可协议