Ubuntu折腾edgeR的安装

首先是conda报错:

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Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.

然后解决这个问题:

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conda config --set channel_priority flexible

然后安装edgeR:

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conda install -c bioconda bioconductor-edger

然后我考虑把conda环境下的edgeR软链接到系统环境下,没法工作,拷贝了也是没法工作。

那直接指定这个包的路径吧,写在R的启动文件里面。

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if (require(edgeR)) {
.libPaths("/home/lixiang/miniconda3/envs/Rpackages/lib/R/library/")
}

搞定😭


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Ubuntu折腾edgeR的安装
https://lixiang117423.github.io/article/condainstallesger/
作者
小蓝哥
发布于
2022年3月28日
许可协议